Bibliography

ATK+03

L. G. Astrakas, A. A. Tzika, S. Kapadakis, F. Makedon, Song Ye, and J. Ford.
The clinical perspective of large scale projects: A case study with pediatric brain tumors & multiparametric mr imaging.
In Human Computer Interaction, Crete, Greece, 2003.

CSM+01a

Ling Cheng, Li Shen, Fillia S. Makedon, Annette M. Donnelly, Laura A. Flashman, and Andrew J. Saykin.
On the development of a training and research system for tracing human brain structures.
In SCI 2001: The 5th World Multi-Conference on Systemics, Cybernetics and Informatics, volume VIII, pages 151-155, Orlando, Florida, USA, July 22-25, 2001.

CSM+01b

Ling Cheng, Li Shen, Fillia S. Makedon, Annette M. Donnelly, Laura A. Flashman, and Andrew J. Saykin.
TROI - a training and research system for tracing regions of interest in brain images.
NeuroImage, 13(6):S1298, June 2001.

FFM+03

J. Ford, H. Farid, F. Makedon, L. A. Flashman, T W McAllister, V. Megalooikonomou, and A. J. Saykin.
Patient classification from fmri brain activation patterns.
In Sixth International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2003), Montreal, Canada, 2003.

FMM+01

James Ford, Fillia Makedon, Vasileios Megalooikonomou, Li Shen, Tilmann Steinberg, and Andrew J. Saykin.
Spatial comparison of fMRI activation maps for data mining.
NeuroImage, 13(6):S1302, June 2001.

For03

James Ford.
Patient Classification from fMRI Brain Activation Patterns.
PhD thesis, Dartmouth College, Hanover, NH, July 2003.

FSM+02

James Ford, Li Shen, Fillia Makedon, Laura Flashman, and Andrew Saykin.
A combined structural-functional classification of schizophrenia using hippocampal volume plus fMRI activation.
In EMBS-BMES2002 Second Joint Meeting of the IEEE Engineering in Medicine and Biology Society and the Biomedical Engineering Society, volume 1, pages 48-49, Houston, Texas, October 23-26, 2002.

HMP+04

Heng Huang, Fillia Makedon, Justin Pearlman, James Ford, Li Shen, Yuhang Wang, and Ling Gao.
Efficient similarity retrieval framework for temporal shape sequences: A case study in cardiac MR images.
In Proc. 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, San Francisco, California, September 1, 2004.

HSF+05

Heng Huang, Li Shen, James Ford, Fillia Makedon, Ling Gao, and Justin Pearlman.
Functional analysis of cardiac MR images using spharm modeling.
In SPIE Medical Imaging 2005: Image Processing, San Diego, California, February 12-17, 2005.

HSM+04

Heng Huang, Li Shen, Fillia S. Makedon, Ling Gao, and Justin Pearlman.
Three-dimensional analysis of cardiac magnetic resonance imaging using spherical harmonics model.
In ACC'04: Annual Scientific Session of the American College of Cardiology, New Orleans, March 7-10, 2004.

HSM+05

Heng Huang, Li Shen, Fillia Makedon, Sheng Zhang, Mark Greenberg, Ling Gao, and Justin Pearlman.
A clustering-based approach for prediction of cardiac resynchronization therapy.
In 20th ACM Symposium on Applied Computing, Santa Fe, New Mexico, March 13-17, 2005.

Mak00

F. Makedon.
Tools towards mining human brain data (invited talk).
In World Conference on the WWW and Internet, San Antonio, TX, 2000.

MFSM00

Vasileios Megalooikonomou, James Ford, Li Shen, and Fillia Makedon.
Data mining in brain imaging.
Statistical Methods in Medical Research, 9(4):359-394, 2000.

MTA+03

Fillia Makedon, A. Aria Tzika, Loukas Astrakas, Justin Pearlman, Yuhang Wang, Tilmann Steinberg, Li Shen, Kristen Chambers, and James Ford.
Fusing information for tracking tumors.
In The 8th World Congress on Advances in Oncology and 6th International Symposium on Molecular Medicine, Hersonissos, Crete, Greece, October 16-18, 2003.

MWS+03

Fillia Makedon, Yuhang Wang, Tilmann Steinberg, Heather Wishart, Andrew Saykin, James Ford, Song Ye, and Li Shen.
A system framework for the integration and analysis of multi-modal spatiotemporal data streams: A case study in MS lesion analysis.
In Proceedings of First International IEEE EMBS Conference on Neural Engineering, pages 495-498, Capri Island, Italy, 2003.

SCT+01

Li Shen, Ling Cheng, Faye Teng, Fillia Makedon, James Ford, Tilmann Steinberg, and Andrew J. Saykin.
A multimedia system for tracing and studying regions-of-interest in brain images.
In IEEE Multimedia Technology and Application Conference, pages 238-245, Irvine, CA, USA, November 7-9, 2001.

SFM+03a

Andrew Saykin, Laura Flashman, T. McHugh, C. Pietras, T. W. McAllister, A. C. Mamourian, R. Vidaver, Li Shen, James Ford, Lin Wang, and Fillia Makedon.
Principal components analysis of hippocampal shape in schizophrenia.
Schizophrenia Research, 60(1):206, March 29 - April 2 2003.

SFM+03b

Li Shen, James Ford, Fillia Makedon, Laura Flashman, and Andrew Saykin.
Surface-based morphometric analysis for hippocampal shape in schizophrenia.
NeuroImage, 19(2):S1004, June 2003.

SFM+03c

Li Shen, James Ford, Fillia Makedon, Yuhang Wang, Tilmann Steinberg, Song Ye, and A. Saykin.
Morphometric analysis of brain structures for improved discrimination.
In MICCAI: Medical Image Computing and Computer Assisted Intervention, LNCS 2879, pages 513-520, Montreal, Quebec, Canada, November 15-18, 2003.

SFMS03a

Li Shen, James Ford, Fillia Makedon, and Andrew Saykin.
Effective classification of 3D closed surfaces: Application to modeling neuroanatomical structures.
In International Conference on Computer Vision, Pattern Recognition and Image Processing (CVPRIP) in conjunction with Seventh Joint Conference On Information Sciences (JCIS), pages 708-711, Cary, North Carolina, USA, September 26-30, 2003. Association for Intelligent Machinery.

SFMS03b

Li Shen, James Ford, Fillia Makedon, and Andrew Saykin.
Hippocampal shape analysis: Surface-based representation and classification.
In M. Sonka and J. M. Fitzpatrick, editors, Medical Imaging 2003: Image Processing, SPIE Proceedings 5032, pages 253-264, San Diego, CA, USA, February 15-20, 2003.

SFMS03c

Li Shen, James Ford, Fillia Makedon, and Andrew Saykin.
A surface-based approach for classification of 3D neuroanatomic structures.
Technical Report TR2003-464, Dartmouth College, Computer Science, Hanover, NH, June 2003.

SFMS05

Li Shen, James Ford, Fillia Makedon, and Andrew Saykin.
A surface-based approach for classification of 3D neuroanatomic structures.
Intelligent Data Analysis, An International Journal, 8(6), January 2005.

SFS+01

Andrew J. Saykin, Laura A. Flashman, Li Shen, John Ashburner, Molly Sparling, Annette Donnelly, Fillia Makedon, David Isecke, James C. Ford, Vasileios Megalooikonomou, and Thomas W. McAllister.
Hippocampal shape in schizophrenia: A deformation-based morphometric analysis.
NeuroImage, 13(6):S1096, June 2001.

SFWM03

T. Steinberg, J. Ford, Y. Wang, and F. Makedon.
Similarity searches in heterogeneous feature spaces.
In 5th WSEAS Int. Conf. on Mathematical Methods and Computational Techniques in Electrical Engineering (MMACTEE 2003), Athens, Greece, 2003.

SGZ+05

Li Shen, Ling Gao, Zhenwu Zhuang, Ebo DeMuinck, Heng Huang, Fillia Makedon, and Justin Pearlman.
An interactive 3d visualization and manipulation tool for effective assessment of angiogenesis and arteriogenesis using computed tomographic angiography.
In SPIE Medical Imaging 2005: Visualization, Image-Guided Procedures, and Display, San Diego, California, February 12-17, 2005.

She04

Li Shen.
Three Dimensional Shape Analysis with Parametric Surface Modeling.
PhD thesis, Dartmouth College, Hanover, NH, June 2004.

SM04a

L. Shen and F. Makedon.
Spherical parameterization for 3d surface analysis in volumetric images.
In International Conference on Information Technology (ITCC 2004), pages 643-649, Las Vegas, NV, 2004. IEEE Computer Society.

SM04b

Li Shen and Fillia Makedon.
Spherical parameterization for 3D surface analysis in volumetric images.
In ITCC 2004: International Conference on Information Technology, pages 643-649, Las Vegas, NV, USA, April 5-7, 2004. IEEE Computer Society.

SM05

Li Shen and Fillia Makedon.
Spherical mapping for processing of 3-D closed surfaces.
Image and Vision Computing, in review, 2005.

SMS04

Li Shen, Fillia Makedon, and Andrew Saykin.
Shape-based discriminative analysis of combined bilateral hippocampi using multiple object alignment.
In J. M. Fitzpatrick and M. Sonka, editors, Medical Imaging 2004: Image Processing, SPIE Proceedings 5370, pages 274-282, San Diego, CA, USA, February 14-19, 2004.

SWF+02

Andrew Saykin, Heather Wishart, Laura Flashman, T. W. McAllister, T. McHugh, James Ford, Li Shen, Tilmann Steinberg, and Fillia Makedon.
Structure/function relationships in brain disorders: Strategies for mining volume, shape, lesion and bold fMRI activation data.
In Society for Biological Psychiatry Meeting, Philadelphia, PA, May 16-18, 2002.

SWM+03

Tilmann Steinberg, Yuhang Wang, Fillia Makedon, Li Shen, Andrew Saykin, and Heather Wishart.
A spatio-temporal multi-modal data management and analysis environment for tracking MS lesions.
In SSDBM 2003: 15th International Conference on Scientific and Statistical Database Management, pages 245-246, Cambridge, MA, July 9-11, 2003. IEEE Computer Society.

WM03

Yuhang Wang and Fillia Makedon.
R-histogram: Quantitative representation of spatialrelations for similarity-based image retrieval.
In The 11th Annual ACM International Conference on Multimedia, pages 323-326, Berkeley, California, USA, 2003.

WM04

Yuhang Wang and Fillia Makedon.
Application of relief-f feature filtering algorithm to selecting informative genes for cancer classification using microarray data (poster paper).
In Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference, Stanford, California, 2004.

WMC04

Yuhang Wang, Fillia Makedon, and Amit Chakrabarti.
R*-histograms: Efficient representation of spatial relations between objects of arbitrary topology.
In Proceedings of the 12th Annual ACM International Conference on Multimedia, pages 356-359, New York, New York, USA, 2004.

WMD04

Yuhang Wang, Fillia Makedon, and Robert L. (Scot) Drysdale.
Fast algorithms to compute the force histogram.
In submission, 2004.

WMF04a

Yuhang Wang, Fillia Makedon, and James Ford.
A bipartite graph matching framework for finding correspondences between structural elements in two proteins.
In Proceedings of the 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2004.

WMF04b

Yuhang Wang, Fillia Makedon, and James Ford.
Mining marker genes for phenotype classification using microarray gene expression data.
In In submission, 2004.

WMF+04c

Yuhang Wang, Fillia Makedon, James Ford, Li Shen, and Dina Goldin.
Generating fuzzy semantic metadata describing spatial relations from images using the R-histogram.
In Proceedings of the Fourth ACM/IEEE-CS Joint Conference on Digital Libraries, pages 202-211, Tucson, Arizona, 2004.

WMFP04

Yuhang Wang, Fillia Makedon, James Ford, and Justin Pearlman.
Hykgene: A hybrid approach for selecting marker genes for phenotype classification using microarray gene expression data.
Bioinformatics, In press, 2004.

WSM+03

Yuhang Wang, Tilmann Steinberg, Fillia Makedon, Heather Wishart, and Andrew Saykin.
Quantifying evolving processes in multimodal 3D medical images.
In The Sixth Annual International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2003), pages 101-108, Montréal, Québec, Canada, 2003.