May 12Welcome to Dr. Ickwon Choi, who is joining us as a postdoc after finishing his PhD at Case Western / Cleveland Clinic, working with Dr. Michael Kattan.
Apr 12Congratulations again to Tuobin, whose algorithmic work for our phosphoproteomics collaboration with Scott Gerber has yielded a paper to appear in Bioinformatics: "MMFPh: A Maximal Motif Finder for Phosphoproteomics Datasets"
Apr 12Congratulations to Tuobin, whose phosphoproteomics work in collaboration with Scott Gerber has yielded a paper to appear in Chemistry & Biology: "Rapid determination of multiple linear kinase substrate motifs by mass spectrometry"
Apr 12Congratulations to Dr. Andrew Scott Parker, who successfully defended his PhD dissertation "Combinatorial optimization methods for the design of deimmunized protein therapeutics"
Mar 12Lu's DNA shuffling paper is out in BMC BIoinformatics
Feb 12The NIH is supporting our therapeutic protein work (collaborative with Karl Griswold, Engineering, and Annie De Groot, Institute for Immunology and Informatics) with an R21 grant "Computationally optimized anti-staphylococcal biotherapeutics"
Jan 12[Now filled] Postdoc position available for the newly-funded antibody effector function project (Gates Foundation Collaboration for AIDS Vaccine Discovery)
Jan 12Welcome to Dr. Yoonjoo Choi, who is joining us as a postdoc after completing a DPhil in protein informatics with Charlotte Deane at Oxford
Dec 11Congratulations to Andrew, whose paper "Structure-Guided Deimmunization of Therapeutic Proteins" has been accepted to RECOMB-2012
Dec 11Congratulations to Lu, whose paper "Ballast: A Ball-based Algorithm for Structural Motifs" has been accepted to RECOMB-2012
Dec 11Congratulations to Andrew, who was invited to give an oral presentation "Optimization algorithms for the design of immunotolerant biotherapies" at the 243rd ACS National meeting
Nov 11PhD positions available for next year, particularly focusing on therapeutic protein design and vaccine design. Apply through the department's admissions process.
Oct 11We will be participating in a newly-funded Gates Foundation collaboration for AIDS vaccine development project on leveraging antibody effector function.
Oct 11Congratulations to Lu, whose paper "A divide and conquer approach to determine the Pareto frontier for optimization of protein engineering experiments" has been accepted to Proteins
Sep 11Andrew's combinatorial mutagenesis paper is out in J Comp Biol.
Jul 11Congratulations to Lu, who won a best poster award at 3dsig for her poster on "Ball-based algorithms for structural motifs"
Jul 11[Now filled] Postdoc position available for our therapeutic protein deimmunization project.
Jul 11Chris is off to the Institute for Immunology and Informatics for a sabbatical.
Jun 11Himanshu's structural inference paper is out at J Comp Biol.
Jun 11The NIH is supporting our work on therapeutic protein deimmunization with an R01 grant entitled "Functional Deimmunization of Therapeutic Proteins"
Jun 11Congratulations to Tozammel (Naren Ramakrishnan's group, Va Tech), whose paper "Using Physicochemical Properties of Amino Acids to induce Graphical Models of Residue Coupling" was accepted to BioKDD-2011.
Jun 11Congratulations to Bornika for successfully defending her MS thesis "Modeling Proteins and Protein-protein Interactions with Probabilistic Graphical Models"
Jun 11Congratulations to Lu, who will be giving a poster at 3dsig: "Ball-based algorithms for structural motifs"
Jun 11Congratulations to Andrew, who will be giving a poster at 3dsig: "EpiDEE: Structure-based deimmunization of therapeutic proteins"
May 11Betty is giving a poster "Computational predictive analysis of relationships between antibody effector function, Fc receptor type, and glycosylation state in HIV patients" at the Wetterhahn symposium

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