Sep 11Andrew's combinatorial mutagenesis paper is out in J Comp Biol.
Jul 11Congratulations to Lu, who won a best poster award at 3dsig for her poster on "Ball-based algorithms for structural motifs"
Jul 11[Now filled] Postdoc position available for our therapeutic protein deimmunization project.
Jul 11Chris is off to the Institute for Immunology and Informatics for a sabbatical.
Jun 11Himanshu's structural inference paper is out at J Comp Biol.
Jun 11The NIH is supporting our work on therapeutic protein deimmunization with an R01 grant entitled "Functional Deimmunization of Therapeutic Proteins"
Jun 11Congratulations to Tozammel (Naren Ramakrishnan's group, Va Tech), whose paper "Using Physicochemical Properties of Amino Acids to induce Graphical Models of Residue Coupling" was accepted to BioKDD-2011.
Jun 11Congratulations to Bornika for successfully defending her MS thesis "Modeling Proteins and Protein-protein Interactions with Probabilistic Graphical Models"
Jun 11Congratulations to Lu, who will be giving a poster at 3dsig: "Ball-based algorithms for structural motifs"
Jun 11Congratulations to Andrew, who will be giving a poster at 3dsig: "EpiDEE: Structure-based deimmunization of therapeutic proteins"
May 11Betty is giving a poster "Computational predictive analysis of relationships between antibody effector function, Fc receptor type, and glycosylation state in HIV patients" at the Wetterhahn symposium
Apr 11Congratulations to Lu, whose paper "Algorithms for optimizing cross-overs in DNA shuffling" was accepted as a regular paper at the 2011 ACM conference on bioinformatics, computational biology, and biomedicine (BCB)
Apr 11Andrew's paper "Optimization of therapeutic proteins to delete T-cell epitopes while maintaining beneficial residue interactions" is out in JBCB
Apr 11Congratulations to Himansu, whose paper "NMR Structural Inference of Symmetric Homo-Oligomers" was accepted to Journal of Computational Biology.
Mar 11Congratulations to Jeff and Tony (Bruce Donald's lab, Duke), whose paper "A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers" was accepted to Protein Science.
Jan 11Immunogenicity workshop announced for this May
Dec 10Chris has been awarded a Dartmouth Senior Faculty Grant to help support his sabbatical next year at the Institute for Immunology and Informatics
Dec 10Congratulations to Jeff and Tony (Bruce Donald's lab, Duke), whose paper "A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs" was accepted to RECOMB-11.
Dec 10Congratulations to Andrew, whose paper "Optimization of combinatorial mutagenesis" was accepted to RECOMB-11.
Nov 10We welcome Betty Huang, who will be joining us as a WISP intern this winter.
Oct 10The preprint of Hetu's GOBLIN paper (graphical model for predicting binding free energies) is up, well in advance of Halloween
Sep 10The NSF is supporting our proposal "Analysis of multi-dimensional protein design spaces with Pareto optimization of experimental designs", collaborative with Alan Friedman (Purdue)
Sep 10Congratulations to Hetu (Chris Langmead's lab at CMU), whose paper "Accounting for Conformational Entropy in Predicting Binding Free Energies of Protein-protein Interactions" has been accepted to Proteins
Aug 10Andrew's IP2 deimmunization paper (demo) is presented at CSB-10.
Jul 10Congratulations to Himanshu, whose paper "A lower bound on the error in dimensionality reduction resulting from projection onto a restricted subspace" was accepted to Linear Algebra and its Applications

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