Feb 13Lu's paper "Ballast: A Ball-based Algorithm for Structural Motifs" is out in JCB
Jan 13Welcome to Dr. Deeptak Verma, who is joining us as a postdoc, after completing a PhD in computational biology at UNC-Charlotte with Dennis Livesay and Donald Jacobs.
Dec 12Congratulations to Dr. Himanshu Chandola on a successful defense of his dissertation "Geometrical and probabilistic methods for determining association models and structures of protein complexes".
Nov 12Congratulations to Yoonjoo, whose paper "Structure-based redesign of proteins for minimal T cell epitope content" was accepted to J. Comp. Chem.
Oct 12[Now filled] Postdoc position available in computational protein design / computational immunology.
Sep 12Congratulations to Eric (Margie Ackerman's group) whose paper "High-throughput, multiplexed IgG subclassing of antigen-specific antibodies from clinical samples" was accepted to J. Immunol. Methods
Jul 12Congraulations to Andres (ICubed) whose paper "Immunoinformatic Analysis of Chinese Hamster Ovary (CHO) Protein Contaminants in Therapeutic Protein Formulations" was accepted to ICIW at ACM-BCB
Jul 12Congratulations to Tozammel (Naren Ramakrishnan's group, Va Tech) whose paper "Improved Multiple Sequence Alignments using Coupled Pattern Mining" was accepted to ACM-BCB
Jul 12Congratulations to Dan (Karl Griswold's lab) whose paper "Design and Analysis of Immune-Evading Enzymes for ADEPT Therapy" (experimentally evaluating some of our computational designs) was accepted at PEDS
Jun 12The NSF will be supporting the computational infrastructure needs of the department with a significant expansion of our cluster (~ 64 new 12-core nodes, high-performance distributed storage, etc.)
May 12Welcome to Dr. Ickwon Choi, who is joining us as a postdoc after finishing his PhD at Case Western / Cleveland Clinic, working with Dr. Michael Kattan.
Apr 12Congratulations again to Tuobin, whose algorithmic work for our phosphoproteomics collaboration with Scott Gerber has yielded a paper to appear in Bioinformatics: "MMFPh: A Maximal Motif Finder for Phosphoproteomics Datasets"
Apr 12Congratulations to Tuobin, whose phosphoproteomics work in collaboration with Scott Gerber has yielded a paper to appear in Chemistry & Biology: "Rapid determination of multiple linear kinase substrate motifs by mass spectrometry"
Apr 12Congratulations to Dr. Andrew Scott Parker, who successfully defended his PhD dissertation "Combinatorial optimization methods for the design of deimmunized protein therapeutics"
Mar 12Lu's DNA shuffling paper is out in BMC BIoinformatics
Feb 12The NIH is supporting our therapeutic protein work (collaborative with Karl Griswold, Engineering, and Annie De Groot, Institute for Immunology and Informatics) with an R21 grant "Computationally optimized anti-staphylococcal biotherapeutics"
Jan 12[Now filled] Postdoc position available for the newly-funded antibody effector function project (Gates Foundation Collaboration for AIDS Vaccine Discovery)
Jan 12Welcome to Dr. Yoonjoo Choi, who is joining us as a postdoc after completing a DPhil in protein informatics with Charlotte Deane at Oxford
Dec 11Congratulations to Andrew, whose paper "Structure-Guided Deimmunization of Therapeutic Proteins" has been accepted to RECOMB-2012
Dec 11Congratulations to Lu, whose paper "Ballast: A Ball-based Algorithm for Structural Motifs" has been accepted to RECOMB-2012
Dec 11Congratulations to Andrew, who was invited to give an oral presentation "Optimization algorithms for the design of immunotolerant biotherapies" at the 243rd ACS National meeting
Nov 11PhD positions available for next year, particularly focusing on therapeutic protein design and vaccine design. Apply through the department's admissions process.
Oct 11We will be participating in a newly-funded Gates Foundation collaboration for AIDS vaccine development project on leveraging antibody effector function.
Oct 11Congratulations to Lu, whose paper "A divide and conquer approach to determine the Pareto frontier for optimization of protein engineering experiments" has been accepted to Proteins
Sep 11Andrew's combinatorial mutagenesis paper is out in J Comp Biol.

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