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Release 2 of the dataset has been prepared
for the 2007 workshop, revising and extending the first release
prepared for the SDM-06 Workshop.
It tracks a set of 1.6 million synthetic individuals at 240,000
locations based on the city of Portland, Oregon. Each individual has
a number of demographic attributes (age, income, work status,
household structure) and daily activities for a normative day
(including places visited and times). A collection of interoperable
simulations--modeling urban infrastructure, people activities, route
plans, traffic, and population dynamics--mimic the time-dependent
interactions of every individual in a regional area. Disease dynamics
are captured by a coupled probabilistic timed transition system
whereby the state of health of a person can change depending on the
health and duration of his or her contacts in the underlying social
network. This form of `individual modeling' provides a bottom-up
approach mirroring the contact structure of individuals and is
naturally suited for formulating and studying the effect of
intervention policies.
References
- C. Bailey-Kellogg, N. Ramakrishnan, and
M. Marathe. Spatial data mining to support pandemic preparedness.
ACM SIGKDD Explorations, 8:80-82, 2006.
article.
- C. Barrett, J. Smith, and S. Eubank.
Modern Epidemiological Modeling. Scientific American, Feb
2005. article.
- C.L. Barrett, R.J. Beckman,
K.P. Berkbigler, K.R. Bisset, B.W. Bush, S. Eubank, K.M. Henson,
J.M. Hurford, D.A. Kubicek, M.V. Marathe, P.R. Romero, J.P. Smith,
L.L. Smith, P.L. Speckman, P.E. Stretz, G.L. Thayer, E. Van
Eeckhout, and M.D. Williams. TRANSIMS: Volumes I, II, III, and IV.
Los Alamos Unclassified Reports 00-1724, 00-1725, 00-1766, and
00-1767, Aug 2004.
- S. Eubank, V.S. Anil Kumar, M. Marathe,
A. Srinivasan, and N. Wang. Structure of Social Contact Networks
and their Impact on Epidemics. AMS-DIMACS Special Volume on
Epidemiology, 2006.
- S. Eubank, H. Guclu, V.S. Anil Kumar,
M. Marathe, A. Srinivasan, Z. Toroczkai, and N. Wang. Modeling
Disease Outbreaks in Realistic Urban Social Networks.
Nature, 429:180-184, May 2004. article.
- N.M. Ferguson, D.A. Cummings,
S. Cauchemez, C. Fraser, S. Riley, A. Meeyai, S. Iamsirithaworn, and
D.S. Burke. Strategies for Containing an Emerging Influenza
Pandemic in Southeast Asia. Nature, 437:209-214, Sep
2005. article.
- US Department of Health and Human Services. HHS
Pandemic Influenza Plan. http://www.hhs.gov/pandemicflu/plan/, Nov 2005.
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