Good review paper, with useful references:

M. Hagiya, Towards molecular programming, in Modeling in Molecular Biology (G.Ciobanu and G.Rozenberg, eds), Springer Natural Computing Series (2004) 125-140, http://nicosia.is.s.u-tokyo.ac.jp/pub/staff/hagiya/singapore2002/hagiya.pdf

http://www.nyu.edu/pages/chemistry/faculty/seeman.html

Edward Coffman, personal communication

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